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View Structure Prediction Details

Protein: 2A5B_ARATH
Organism: Arabidopsis thaliana
Length: 499 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 2A5B_ARATH.

Description E-value Query
Range
Subject
Range
gi|109084945 - gi|109084945|ref|XP_001112240.1| PREDICTED: similar to gamma isoform of regulatory subunit B56, prot...
812.0 [0..12] [488..246]

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Predicted Domain #1
Region A:
Residues: [1-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT  60
   61 PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF TDTIKNARDK EIKRQTLLEL 120
  121 VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL 180
  181 QLVYELLLRY VVSTDTDTKV AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM 240
  241 VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL 300
  301 HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA 360
  361 TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH IVGLIAQNRS VILPIIYPTL 420
  421 EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA 480
  481 EAAAERDGGG GEEDHMITS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nppB
Description: No description for 2nppB was found.

Predicted functions:

Term Confidence Notes
binding 0.373576425899935 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle