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View Structure Prediction Details

Protein: gi|4580477, gi|4...
Organism: Arabidopsis thaliana
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4580477, gi|4....

Description E-value Query
Range
Subject
Range
gi|13560653, gi|... - gi|51980753|gb|AAU20808.1| basic PR-1 protein precursor [Capsicum annuum], gi|44890233|gb|AAC06244.2...
179.0 [0..7] [176..1]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEMSFFGYS FIVVALFFDL TQAYRHTPAQ PPKANANGDV KPQETLVVHN KARAMVGVGP  60
   61 MVWNETLATY AQSYAHERAR DCAMKHSLGP FGENLAAGWG TMSGPVATEY WMTEKENYDY 120
  121 DSNTCGGDGV CGHYTQIVWR DSVRLGCASV RCKNDEYIWV ICSYDPPGNY IGQRPY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.39794
Match: 1cfeA
Description: P14A, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.033150579944907 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle