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View Structure Prediction Details

Protein: gi|15238267, gi|...
Organism: Arabidopsis thaliana
Length: 159 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15238267, gi|....

Description E-value Query
Range
Subject
Range
gi|215715252, gi... - gi|50936535|ref|XP_477795.1| 26S proteasome regulatory particle non-ATPase subunit12 [Oryza sativa (...
185.0 [0..11] [159..119]

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Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLNLLRLLV QNRIAEFHTE LGLLSSATLE NPCIKHAVEL EQSFMEGAYN RVLSARQTAP  60
   61 DETYVYFMDL LAKTIRDEIA GCSEKAYDHL SISEGCKMLL FSSDQQLLTY VNEEHPEWEV 120
  121 KDGLVVFQKT RETAPCKEIP SLQLINQTLS YTRELERIL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.21
Match: 1rz4A
Description: Crystal Structure of Human eIF3k
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.683379929086364 bayes_pls_golite062009
transcription regulator activity 0.16959343932447 bayes_pls_golite062009
nucleic acid binding 0.0949481158963694 bayes_pls_golite062009
DNA binding 0.00746597740509714 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle