Protein: | gi|133778824, gi... |
Organism: | Arabidopsis thaliana |
Length: | 561 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|133778824, gi....
Description | E-value | Query Range |
Subject Range |
|
255.0 | [0..1] | [561..1] |
|
246.0 | [0..2] | [559..4] |
|
243.0 | [0..2] | [558..4] |
|
228.0 | [0..172] | [557..1] |
Region A: Residues: [1-79] |
1 11 21 31 41 51 | | | | | | 1 MDFDEYEYLE KTVENPHLEN EVGNGGGDEK VKSEGKERSR SSRHRGDKKK ERDEDEDGRR 60 61 SKRSRSHHRS RSRDRERDR |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [80-174] |
1 11 21 31 41 51 | | | | | | 1 HRSSREHRDR DREKDVDKEE RNGKDRERDR DKDRDSKGRD HEKDRSRRSR SRSERHRSQE 60 61 REKSLEIEPK ERETKDRDRD RRRHKDKKED KVEPE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [175-375] |
1 11 21 31 41 51 | | | | | | 1 ADPERDQRTV FAYQIALRAT ERDVYEFFSR AGKVRDVRII MDRISRRSRG IGYVEFYDTM 60 61 SVPMAIALSG QPLLGQPVMV KPSEAEKNLV QSTTAAAGAG GMLGPYSGGA RRLYVGNLHI 120 121 NMSEDDLRKV FESFGSVELV QVPRDETGLC KGFGFVQFAR LEDARNALNL NGQLEIAGRA 180 181 IKVSAVTDQT EVPEAGQTQT T |
Detection Method: | |
Confidence: | 37.69897 |
Match: | 1cvjA |
Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [376-464] |
1 11 21 31 41 51 | | | | | | 1 GDLDDDDGGG LSLNAQSRAL LMQKLDRSGT ASSTGLTTAA SFNGGVSTIS SLAAPALVQG 60 61 SFPAVAGLAG SGIIPGVIPA GFDPIGVPS |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [465-561] |
1 11 21 31 41 51 | | | | | | 1 ECLLLKNMFD PSTETEDDFD EDIKEDVKEE CSKFGKLNHI FVDKNSVGFV YLRFENAQAA 60 61 IGAQRALHGR WFAGKMITAT YMTTEAYEAK FPESKVV |
Detection Method: | |
Confidence: | 7.30103 |
Match: | 1o0pA |
Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |