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View Structure Prediction Details

Protein: gi|55740679, gi|...
Organism: Arabidopsis thaliana
Length: 422 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55740679, gi|....

Description E-value Query
Range
Subject
Range
gi|52354513 - gi|52354513|gb|AAU44577.1| hypothetical protein AT5G48040 [Arabidopsis thaliana]
622.0 [0..1] [422..1]

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Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHWLLQRRVS LSTSLCKCRE RFDFFYQQRC GLVNVKLKWV KDRELDAVVV REKHLRAVCN  60
   61 LVSVISASPD LRLPIFKLLP HRGQLGLPQE LKLSAFIRRY PNIFVEHCYW DSAGTSVPCF 120
  121 GLTRETIDLY YEEVDVSRVN ERDVLVRLCK LLMLTCERTL SLHSIDHLRW DLGLPYDYRD 180
  181 SLITKHPDLF SLVKLSSDLD GLKLIHWDEH LAVSQMQLRE DVGNDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [227-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMAFPVKFTR GFGLKRKSIE WLQEWQRLPY TSPYVDASHL DPRTDLSEKR NVGVFHELLH  60
   61 LTIGKKTERK NVSNLRKPFA LPQKFTKVFE RHPGIFYISM KCDTQTVILR EAYDRRHLIE 120
  121 KHPLVEVREK FANMMNEGFL DRSRGLYQKS VEADLEKNNI KTSYPVWSDE EEELDNNLIS 180
  181 GYDSDCPVVE EHKRVF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle