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View Structure Prediction Details

Protein: gi|55740679, gi|...
Organism: Arabidopsis thaliana
Length: 422 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55740679, gi|....

Description E-value Query
Range
Subject
Range
gi|52354513 - gi|52354513|gb|AAU44577.1| hypothetical protein AT5G48040 [Arabidopsis thaliana]
622.0 [0..1] [422..1]

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Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHWLLQRRVS LSTSLCKCRE RFDFFYQQRC GLVNVKLKWV KDRELDAVVV REKHLRAVCN  60
   61 LVSVISASPD LRLPIFKLLP HRGQLGLPQE LKLSAFIRRY PNIFVEHCYW DSAGTSVPCF 120
  121 GLTRETIDLY YEEVDVSRVN ERDVLVRLCK LLMLTCERTL SLHSIDHLRW DLGLPYDYRD 180
  181 SLITKHPDLF SLVKLSSDLD GLKLIHWDEH LAVSQMQLRE DVGNDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [227-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMAFPVKFTR GFGLKRKSIE WLQEWQRLPY TSPYVDASHL DPRTDLSEKR NVGVFHELLH  60
   61 LTIGKKTERK NVSNLRKPFA LPQKFTKVFE RHPGIFYISM KCDTQTVILR EAYDRRHLIE 120
  121 KHPLVEVREK FANMMNEGFL DRSRGLYQKS VEADLEKNNI KTSYPVWSDE EEELDNNLIS 180
  181 GYDSDCPVVE EHKRVF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle