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View Structure Prediction Details

Protein: CRK36_ARATH
Organism: Arabidopsis thaliana
Length: 658 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRK36_ARATH.

Description E-value Query
Range
Subject
Range
gi|24417476 - gi|24417476|gb|AAN60348.1| unknown [Arabidopsis thaliana]
471.0 [0..18] [658..21]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSNLFHIP CFLLLFLLFN INGVHTTFVC GDEDFSPNTS YVENLESLLP SLASNVIRER  60
   61 GFYNVSLDGV YALALCRKHY EVQACRRCVD RASRTLLTQC RGKTEAYHWD SENDANVSCL 120
  121 VRYSNIHRFG KLKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [135-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPIGNVPHSS LDPSSNLTRI SQEFAARANR TVEVASTADE SSVLKYYGVS SAEFTDTPEV  60
   61 NMLMQCTPDL SSSDCNHCLR ENVRYNQEHN WDRVGGTVAR PSCYFRWDDY RFAGAFDNLE 120
  121 RVPAPPRSPQ TRQDYRVKKG RMFQPWSVVV VVFPTGINLA VFVAFVLAYR RM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.39794
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.87302803330255 bayes_pls_golite062009
protein binding 1.69661396118522 bayes_pls_golite062009
protein kinase activity 1.43632437878638 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.16530645523007 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.12585418084562 bayes_pls_golite062009
kinase activity 1.11577341189523 bayes_pls_golite062009
receptor activity 0.823142813332745 bayes_pls_golite062009
transmembrane receptor activity 0.569410390698942 bayes_pls_golite062009
transferase activity 0.435331931559158 bayes_pls_golite062009
signal transducer activity 0.405945668463821 bayes_pls_golite062009
molecular transducer activity 0.405945668463821 bayes_pls_golite062009
nucleic acid binding 0.370391722473665 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [307-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRRIYTEINK NSDSDGQATL RFDLGMILIA TNEFSLENKL GQGGFGSVYK GILPSGQEIA  60
   61 VKRLAGGSGQ GELEFKNEVL LLTRLQHRNL VKLLGFCNEG NEEILVYEHV PNSSLDHFIF 120
  121 DEDKRWLLTW DVRYRIIEGV ARGLLYLHED SQLRIIHRDL KASNILLDAE MNPKVADFGM 180
  181 ARLFNMDETR GETSRVVGTY GYMAPEYVRH GQFSAKSDVY SFGVMLLEMI SGEKNKNFET 240
  241 EGLPAFAWKR WIEGELESII DPYLNENPRN EIIKLIQIGL LCVQENAAKR PTMNSVITWL 300
  301 ARDGTFTIPK PTEAAFVTLP LSVKPENRSM SERKDKDPFS VDEVSITVLY PR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.154902
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle