YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TIR_ARATH
Organism: Arabidopsis thaliana
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIR_ARATH.

Description E-value Query
Range
Subject
Range
gi|15222527, gi|... - pir||D96662 hypothetical protein F24D7.8 [imported] - Arabidopsis thaliana, gi|15222527|ref|NP_1765...
205.0 [0..2] [175..6]

Back

Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHTATKYD VFLSFRGHDT RHNFISFLYK ELVRRSIRTF KDDKELENGQ RFSPELKSPI  60
   61 EVSRFAVVVV SENYAASSWC LDELVTIMDF EKKGSITVMP IFYGVEPNHV RWQTGVLAEQ 120
  121 FKKHASREDP EKVLKWRQAL TNFAQLSGDC SGDDDSKLVD KIANEISNKK TIYATI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.30103
Match: 1fyvA
Description: Toll-like receptor 1, TLR1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.261666574457319 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle