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View Structure Prediction Details

Protein: SCP44_ARATH
Organism: Arabidopsis thaliana
Length: 479 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP44_ARATH.

Description E-value Query
Range
Subject
Range
SCP29_ARATH - Serine carboxypeptidase-like 29 OS=Arabidopsis thaliana GN=SCPL29 PE=2 SV=1
443.0 [0..3] [479..7]

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Predicted Domain #1
Region A:
Residues: [1-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGKWRFLE VAVVVMVLQW SCDYNGNLAE GFPVQDLVTK LPGQPEVAFR QFAGYVDIDV  60
   61 KAGRSLFYYF VEAEKQPHSK PLTLWLNGGP GCSSIGGGAF TELGPFYPTG DARGLRRNPK 120
  121 SWNKASNLLF VDSPAGVGWS YSNTTSDYTT GDESTAKDML VFMLRWLEKF PQFKTRNLFL 180
  181 AGESYAGHYV PQLADVILEY NAQRSNRFKF NLKGIAIGNP LLKLDRDVPA IYEFFWSHGM 240
  241 ISDELGLTIM NQCDFEDYTF TDSHNISKLC EAAVNQAGTI ITQYVNYYDI LLDVCYPSLF 300
  301 EQELRLKKMG TRMSFGVDVC MSFEEQLYLN LPEVQKALHA NRTKLPYEWS MCSSLLNYKY 360
  361 TDGNANMLPI LKRIVKSKVP VWVFSGDEDS VIPLLGSRTL VKELADDLNF NTTVPYGAWF 420
  421 DKGQVGGWVV EYGNLLTFAT VRGAAHMVPY SQPSRALHLF TSFVLGRKLP HKSPPALHD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1ivyA
Description: Human 'protective protein', HPP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 4.09944423676394 bayes_pls_golite062009
peptidase activity 2.49064988313037 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.10044305272656 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 1.3250951453762 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.541803897301601 bayes_pls_golite062009
endopeptidase activity 0.43631945855397 bayes_pls_golite062009
binding 0.351031277062254 bayes_pls_golite062009
palmitoyl-CoA hydrolase activity 0.1174692258176 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle