YRC Public Data Repository - Protein Structure Prediction

Protein:	RR5_ARATH
Organism:	Arabidopsis thaliana
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RR5_ARATH.

Description	E-value	Query Range	Subject Range
gi\|157138201, gi... - gi\|157138201\|ref\|XP_001664173.1\| 28S ribosomal protein S5 [Aedes aegypti], gi\|108880658\|gb\|EAT44883....	274.0	[0..2]	[302..52]
gi\|116128850, gi... - gi\|118783399\|ref\|XP_312962.3\| ENSANGP00000020335 [Anopheles gambiae str. PEST], gi\|116128850\|gb\|EAA0...	267.0	[0..4]	[302..53]
RS2_ICTPU - 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1	262.0	[0..74]	[303..3]
gi\|2920825 - gi\|2920825\|gb\|AAC04621.1\| ribosomal protein S2 [Rattus norvegicus]	257.0	[0..93]	[303..6]
gi\|82918273, gi\|... - gi\|94383782\|ref\|XP_997963.1\| PREDICTED: hypothetical protein [Mus musculus], gi\|82918273\|ref\|XP_9071...	255.0	[0..105]	[303..54]
gi\|60653393 - gi\|60653393\|gb\|AAX29391.1\| ribosomal protein S2 [synthetic construct]	255.0	[0..105]	[303..54]
RR5_SPIOL - 30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1	255.0	[0..41]	[303..48]
gi\|125812068, gi... - gi\|47086117\|ref\|NP_998444.1\| ribosomal protein S2 [Danio rerio], gi\|45768675\|gb\|AAH67645.1\| Ribosoma...	255.0	[0..105]	[303..40]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASALSSL SSLSLHTRTS SLISSSSTKS IVSFSSFLNR RFSSLTLVKA SSTDTETIFF  60
   61 EDETPEITAN VVFDPPIAPE GFVSPPYFDE GSDETEEEIA TAFEELYGPA YSGESMLGKD 120
  121 IYVMDSKHKK SSGIGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [137-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPKKDKIRDG FEERVVQVRR VTKVVKGGKQ LKFRAIVVVG DKQGNVGVGC AKAKEVVAAV  60
   61 QKSAIDARRN IVQVPMTKYS TFPHRSEGDY GAAKVMLRPA SPGTGVIAGG AVRIVLEMAG 120
  121 VENALGKQLG SNNALNNARA TLAAVQQMRQ FRDVAQERGI PMEELWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.09691
Match:	1vs5E
Description:	No description for 1vs5E was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits