YRC Public Data Repository - Protein Structure Prediction

Protein:	RR5_ARATH
Organism:	Arabidopsis thaliana
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RR5_ARATH.

Description	E-value	Query Range	Subject Range
gi\|157138201, gi... - gi\|157138201\|ref\|XP_001664173.1\| 28S ribosomal protein S5 [Aedes aegypti], gi\|108880658\|gb\|EAT44883....	274.0	[0..2]	[302..52]
gi\|116128850, gi... - gi\|118783399\|ref\|XP_312962.3\| ENSANGP00000020335 [Anopheles gambiae str. PEST], gi\|116128850\|gb\|EAA0...	267.0	[0..4]	[302..53]
RS2_ICTPU - 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1	262.0	[0..74]	[303..3]
gi\|2920825 - gi\|2920825\|gb\|AAC04621.1\| ribosomal protein S2 [Rattus norvegicus]	257.0	[0..93]	[303..6]
gi\|82918273, gi\|... - gi\|94383782\|ref\|XP_997963.1\| PREDICTED: hypothetical protein [Mus musculus], gi\|82918273\|ref\|XP_9071...	255.0	[0..105]	[303..54]
gi\|60653393 - gi\|60653393\|gb\|AAX29391.1\| ribosomal protein S2 [synthetic construct]	255.0	[0..105]	[303..54]
RR5_SPIOL - 30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1	255.0	[0..41]	[303..48]
gi\|125812068, gi... - gi\|47086117\|ref\|NP_998444.1\| ribosomal protein S2 [Danio rerio], gi\|45768675\|gb\|AAH67645.1\| Ribosoma...	255.0	[0..105]	[303..40]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASALSSL SSLSLHTRTS SLISSSSTKS IVSFSSFLNR RFSSLTLVKA SSTDTETIFF  60
   61 EDETPEITAN VVFDPPIAPE GFVSPPYFDE GSDETEEEIA TAFEELYGPA YSGESMLGKD 120
  121 IYVMDSKHKK SSGIGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.458	d.110.4	SNARE-like
View	Download	0.458	d.110.4	SNARE-like
View	Download	0.432	d.189.1	PX domain
View	Download	0.431	d.110.4	SNARE-like
View	Download	0.431	d.110.4	SNARE-like
View	Download	0.380	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.367	d.224.1	SufE-like
View	Download	0.363	d.199.1	DNA-binding C-terminal domain of the transcription factor MotA
View	Download	0.363	d.199.1	DNA-binding C-terminal domain of the transcription factor MotA
View	Download	0.227	d.110.4	SNARE-like
View	Download	0.213	c.51.2	TolB, N-terminal domain

Predicted Domain #2

Region A:
Residues: [137-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPKKDKIRDG FEERVVQVRR VTKVVKGGKQ LKFRAIVVVG DKQGNVGVGC AKAKEVVAAV  60
   61 QKSAIDARRN IVQVPMTKYS TFPHRSEGDY GAAKVMLRPA SPGTGVIAGG AVRIVLEMAG 120
  121 VENALGKQLG SNNALNNARA TLAAVQQMRQ FRDVAQERGI PMEELWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.09691
Match:	1vs5E
Description:	No description for 1vs5E was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits