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View Structure Prediction Details

Protein: 2A5T_ARATH
Organism: Arabidopsis thaliana
Length: 492 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 2A5T_ARATH.

Description E-value Query
Range
Subject
Range
gi|109084945 - gi|109084945|ref|XP_001112240.1| PREDICTED: similar to gamma isoform of regulatory subunit B56, prot...
809.0 [0..7] [492..242]

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Predicted Domain #1
Region A:
Residues: [1-492]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKQILSKLP KKSSSKNHSS SSSSTSKSSD NGASKSGNSQ TQNAPPVKPS ADSGFKEGNL  60
   61 KGNGNGFTPY EALPGFKDVP NAEKQNLFVR KLSLCCVVFD FSDPTKNVKE KDIKRQTLLE 120
  121 LVDYVASPNG KFSETVIQEV VRMVSVNIFR TLNPQPRENK VIDALDLEEE EPSMDPTWPH 180
  181 LQLVYEILLR LIASPETDTK LAKKYIDQSF VSRLLDLFDS EDPRERDCLK TVLHRIYGKF 240
  241 MVHRPFIRKS INNIFYRFVF ETEKHNGIAE FLEILGSIIN GFALPLKDEH KVFLVRALVP 300
  301 LHKPKSLQMY HQQLSYCITQ FVEKDCKLAD TVIRGLLKSW PVTNSSKEVM FLNELEEVLE 360
  361 ATQPPEFQRC MVPLFRQVAR CLNSLHFQVA ERALFLWNND HIENLIMQNR KVILPIIFPA 420
  421 LERNTQKHWN QAVHSLTLNV QKIFNDIDAE LFKDCLAKFR EDESKEAEIG AKREATWKRL 480
  481 EEIGNQKQKS SL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nppB
Description: No description for 2nppB was found.

Predicted functions:

Term Confidence Notes
binding 1.2838670704442 bayes_pls_golite062009
protein binding 0.624843978607333 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle