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View Structure Prediction Details

Protein: gi|15241421, gi|...
Organism: Arabidopsis thaliana
Length: 590 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241421, gi|....

Description E-value Query
Range
Subject
Range
gi|114685878 - gi|114685878|ref|XP_515076.2| PREDICTED: pescadillo homolog 1, containing BRCT domain isoform 3 [Pan...
698.0 [0..8] [572..6]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKHYRPTGK KKEGNAARYM TRSQALKHLQ VNLNLFRRLC IVKGIFPREP KKKIKGNHHT  60
   61 YYHVKDIAFL MHEPLLEKFR EIKTYQKKVK KAKAKKNEEL ARLLLTRQPT YKLDRLIRER 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPTFIDALRD LDDCLTMVHL FAVLPASDRE NLEVKRVHNC RRLTHEWQAY ISRSHALRKV  60
   61 FVSVKGIYYQ AEIEGQKITW LTPHAIQQVF TNDVDFGVLL TFLEFYETLL AFINFKLYHS 120
  121 LNVKYPPILD SRLEALAAD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [260-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYALSRYIDA SSRGMAVEPK VDASFSSQSN DREESELRLA QLQHQLPSSE PGALMHLVAD  60
   61 NNKEVEEDEE TRVCKSLFKD LKFFLSREVP RESLQLVITA FGGMVSWEGE GAPFKEDDES 120
  121 ITHHIIDKPS AGHLYLSRVY VQPQWIYDCV NARIILPTEK YLVGRIPPPH LSPFVDNEAE 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.154902
Match: 2ep8A
Description: No description for 2ep8A was found.

Predicted Domain #4
Region A:
Residues: [440-590]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYVPDYAETI KRLQAAARNE VLPLPGVGKE DLEDPQNLLY AGVMSRAEEA EAAKNKKKMA  60
   61 AQEKQYHEEL KMEINGSKDV VAPVLAEGEG EESVPDAMQI AQEDADMPKV LMSRKKRKLY 120
  121 DAMKISQSRK RSGVEIIEQR KKRLNDTQPS S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.045757
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle