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View Structure Prediction Details

Protein: gi|15241421, gi|...
Organism: Arabidopsis thaliana
Length: 590 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241421, gi|....

Description E-value Query
Range
Subject
Range
gi|114685878 - gi|114685878|ref|XP_515076.2| PREDICTED: pescadillo homolog 1, containing BRCT domain isoform 3 [Pan...
698.0 [0..8] [572..6]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKHYRPTGK KKEGNAARYM TRSQALKHLQ VNLNLFRRLC IVKGIFPREP KKKIKGNHHT  60
   61 YYHVKDIAFL MHEPLLEKFR EIKTYQKKVK KAKAKKNEEL ARLLLTRQPT YKLDRLIRER 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPTFIDALRD LDDCLTMVHL FAVLPASDRE NLEVKRVHNC RRLTHEWQAY ISRSHALRKV  60
   61 FVSVKGIYYQ AEIEGQKITW LTPHAIQQVF TNDVDFGVLL TFLEFYETLL AFINFKLYHS 120
  121 LNVKYPPILD SRLEALAAD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [260-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYALSRYIDA SSRGMAVEPK VDASFSSQSN DREESELRLA QLQHQLPSSE PGALMHLVAD  60
   61 NNKEVEEDEE TRVCKSLFKD LKFFLSREVP RESLQLVITA FGGMVSWEGE GAPFKEDDES 120
  121 ITHHIIDKPS AGHLYLSRVY VQPQWIYDCV NARIILPTEK YLVGRIPPPH LSPFVDNEAE 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.154902
Match: 2ep8A
Description: No description for 2ep8A was found.

Predicted Domain #4
Region A:
Residues: [440-590]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYVPDYAETI KRLQAAARNE VLPLPGVGKE DLEDPQNLLY AGVMSRAEEA EAAKNKKKMA  60
   61 AQEKQYHEEL KMEINGSKDV VAPVLAEGEG EESVPDAMQI AQEDADMPKV LMSRKKRKLY 120
  121 DAMKISQSRK RSGVEIIEQR KKRLNDTQPS S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.045757
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle