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View Structure Prediction Details

Protein: HIP21_ARATH
Organism: Arabidopsis thaliana
Length: 149 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIP21_ARATH.

Description E-value Query
Range
Subject
Range
gi|32442810 - gi|32442810|gb|AAN23108.2| putative farnesylated protein [Brassica rapa subsp. pekinensis]
141.0 [0..1] [149..1]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFDYISSF CSYTYANAKT KRKPLQTVDI KVKMDCDGCE RRVRNVVRRM KGVKSVEVNR  60
   61 KQSRITVNGH VDPNKVLKRV KSTGKKAEFW PYIPQHMVYY PFAPGMYDKR APAGHIRNPT 120
  121 QSFPTANAPE ENYVSLFSDD NVHAACSIM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.045757
Match: 1p6tA
Description: Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.246147507070597 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle