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View Structure Prediction Details

Protein: RR9_ARATH
Organism: Arabidopsis thaliana
Length: 208 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RR9_ARATH.

Description E-value Query
Range
Subject
Range
gi|51971475 - gi|51971475|dbj|BAD44402.1| putative ribosomal protein S9 [Arabidopsis thaliana]
239.0 [0..1] [208..1]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE  60
   61 EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE GTGKVIINYR DAKEYLQGNP 120
  121 LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG 180
  181 LLTRDARVVE RKKAGLKKAR KAPQFSKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.0
Match: 1vs5I
Description: No description for 1vs5I was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 7.32829196949019 bayes_pls_golite062009
structural molecule activity 6.75880680396215 bayes_pls_golite062009
3'-5'-exoribonuclease activity 1.56111033008721 bayes_pls_golite062009
RNA binding 1.40868766468494 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 1.35935222635763 bayes_pls_golite062009
exoribonuclease activity 1.31205157616894 bayes_pls_golite062009
3'-5' exonuclease activity 1.10842504252923 bayes_pls_golite062009
catalytic activity 0.878454819018611 bayes_pls_golite062009
binding 0.478154009944658 bayes_pls_golite062009
nucleic acid binding 0.475563727785465 bayes_pls_golite062009
transcription regulator activity 0.229159987045404 bayes_pls_golite062009
mRNA binding 0.0491645692672305 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 6.9430052008157E-5 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle