YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15226333, gi|...
Organism: Arabidopsis thaliana
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15226333, gi|....

Description E-value Query
Range
Subject
Range
gi|74007803 - gi|74007803|ref|XP_860306.1| PREDICTED: similar to ATPase, Cu++ transporting, alpha polypeptide isof...
153.0 [0..18] [196..261]

Back

Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENPQVCECY HGDVEEEKKK KQNNTTSPVH VVLKIDFHCD GCIARIVRLS RRLEGVETVR  60
   61 ADPDSNKLTL IGFIMDPVKI AEKLQKKSKK KVELISPKPK KDTKENNEKK ANDKTQTVVA 120
  121 VTTVVLKVNC SCDGCIKRIQ KAVSTTKGVY QVKMDKEKET VTVMGTMDIK SVTDNLKRKL 180
  181 KKTVQVVPEK KKKKKDKDNA EVNTKVGSPC QPGNGCTHGI GPYRFMEGPM TGFFSEEDQS 240
  241 YCSVM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.39794
Match: 1p6tA
Description: Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.246147507070597 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle