| Protein: | gi|5262791, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 275 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5262791, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
308.0 | [0..1] | [273..1] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MALREQLDKF NKQQEKCQST LSSISSSRTA LSRSYVPAAT TSQKPNVFRG KFSENTKQLQ 60
61 HITNIRNSAV GAQMKIVIDL LFKTRLAYTA EQINEACYVD MHNNKAVFDS LRKNPKVHYD 120
121 G
|
| Detection Method: |  |
| Confidence: | 17.30103 |
| Match: | 1d8jA |
| Description: | The central core domain of TFIIE beta |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [122-275] |
1 11 21 31 41 51
| | | | | |
1 RRFSYKATHN IKDKKQLLSF VNKSDKVIDV SDLKDAYPNV MEDLKSLKSS GEIFWLLSNT 60
61 DSKEGTVYRN NMEYPKIDDE LKALFRDIIP SDMLEVEKEL LKIGLKPATN IAERRAAEQL 120
121 HGVSNKPKDK KKKKKEITNR TKLTNSHMLE LFQS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.271 | d.131.1 | DNA clamp |
| View | Download | 0.253 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.205 | a.40.2 | X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |
