YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: WOX14_ARATH
Organism: Arabidopsis thaliana
Length: 211 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WOX14_ARATH.

Description E-value Query
Range
Subject
Range
gi|40233103, gi|... - gi|40233103|gb|AAR83342.1| homeodomain protein HB1 [Populus tomentosa], gi|40233067|gb|AAR83340.1| h...
119.0 [0..23] [205..9]

Back

Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKKKEKEK SKEIEEMDRE IQNGAYSGRV MTEEQMEILR KQIAVYAVIC DQLVLLHNSL  60
   61 SSYHPLSSGV RPMVGGYFDP MGASSSSHRI STRHRWTPTS TQLQILESIY DEGSGTPNRR 120
  121 RIREIATELS EHGQITETNV YNWFQNRRAR SKRKQPQTTT ANGQADDVAV TTEERRSCGD 180
  181 SGGLESYEHI LFPSPDLGIE HLLSIGKFME T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1au7A
Description: Pit-1 POU homeodomain; Pit-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.971797124886045 bayes_pls_golite062009
nucleic acid binding 0.74904610690468 bayes_pls_golite062009
DNA binding 0.73457854282882 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle