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View Structure Prediction Details

Protein: SCP36_ARATH
Organism: Arabidopsis thaliana
Length: 482 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP36_ARATH.

Description E-value Query
Range
Subject
Range
SCP37_ARATH - Serine carboxypeptidase-like 37 OS=Arabidopsis thaliana GN=SCPL37 PE=2 SV=2
544.0 [0..1] [482..1]

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Predicted Domain #1
Region A:
Residues: [1-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRQDWSVT ACIFLFLSLA SQIHCRSHIP FPSPKRGVSS SGDTSHFNVI QRESVPSPKD  60
   61 KDLIQQLPGQ PSDVTFKQYG GYVAVNKPAG RFLYYYFVET IKPGNTTPLV IWFNGGPGCS 120
  121 SLGGAFKELG PFRVHSDGKT LFRNPYSWNN EANVLFLETP VGTGFSYSNS PINGKQGDKA 180
  181 TAEDNYMFLV NWLERFPEYK GRDIYIAGQS YAGHYVPQLA QIILHRNNQT LINLRGILIG 240
  241 NPSLNREIQD DFGYKFMFSH GLISQQQMDN YNKFCTDSDL YDWDKCHLAS QKIEAQKTHL 300
  301 DIYNIYAPLC LNSTLSSEPK KCTTIMKADP CSGNYLKAYL NIKEVQEAIH ANTTKIPYEW 360
  361 TSCNTKLLWE WNEKDRYVSL TPILQELMGK GVRVMLYNGD VDLVIPFTST LAVVKTMNLT 420
  421 VVKEWRPWFT GGHVGGFTED YKGNLTFVTV KGAGHSVPTD QPIHALNIFT SFIRNTPLPQ 480
  481 TA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 101.0
Match: 1ivyA
Description: Human 'protective protein', HPP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 4.09944423676394 bayes_pls_golite062009
peptidase activity 2.49064988313037 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.10044305272656 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 1.3250951453762 bayes_pls_golite062009
binding 0.780364496307855 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.541803897301601 bayes_pls_golite062009
endopeptidase activity 0.43631945855397 bayes_pls_golite062009
palmitoyl-CoA hydrolase activity 0.1174692258176 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle