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View Structure Prediction Details

Protein: MUTE_ARATH
Organism: Arabidopsis thaliana
Length: 202 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MUTE_ARATH.

Description E-value Query
Range
Subject
Range
gi|18542170 - gi|18542170|gb|AAL75479.1|AF466202_5 r1-B73 [Zea mays]
140.0 [0..2] [195..391]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKELQ QLVQVLESKK  60
   61 RRKTLNRPSF PYDHQTIEPS SLGAATTRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 1r05A
Description: Solution Structure of Max B-HLH-LZ
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.12507195426228 bayes_pls_golite062009
nucleic acid binding 0.43204604575196 bayes_pls_golite062009
DNA binding 0.40884226851256 bayes_pls_golite062009
transcription regulator activity 0.31759335140578 bayes_pls_golite062009
transcription factor activity 0.09721565916723 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [90-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFSRIENVMT TSTFKEVGAC CNSPHANVEA KISGSNVVLR VVSRRIVGQL VKIISVLEKL  60
   61 SFQVLHLNIS SMEETVLYFF VVKIGLECHL SLEELTLEVQ KSFVSDEVIV STN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.37
Match: 1zpvA
Description: ACT domain protein from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.0923752113053079 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle