YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SCP2_ARATH
Organism: Arabidopsis thaliana
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP2_ARATH.

Description E-value Query
Range
Subject
Range
SCP3_ARATH - Serine carboxypeptidase-like 3 OS=Arabidopsis thaliana GN=SCPL3 PE=2 SV=1
493.0 [0..1] [441..1]

Back

Predicted Domain #1
Region A:
Residues: [1-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKYFSSVL KSLLLLLHLV FLSKQHVDSA SIVKFLPGFE GPLPFELETG YIGIGEEEEV  60
   61 QLFYYFIKSE RNPKEDPLIL WLTGGPGCSS ISGLLFENGP LTMKLDVYNG TLPSLVSTTY 120
  121 SWTKTSSMIF LDQPVGTGFS YSRTQQFNKP SDSGEAKRIH EFLQKWLGKH QEFSSNPFYV 180
  181 AGDSYSGLVV PATVQEISKG NYECCNPPIN LQGYVLGNPL TDYAIDSNSR IPFAHGMALI 240
  241 SDELYESLKK TCKGEYTNVH PRNTQCLKFI EEFNKCTNRI LQQLILDPLC ETETPDCYIY 300
  301 RYLLTTYWAN DATVREALQI NKESIGEWVR CYRTIPYDND IKSSMPYHVN NSISGYRSLI 360
  361 YSGDHDLEVP YLGTQAWIRS LNYSIIDDWR PWMIKNQIAG YTRTYANKMT FATIKGGGHT 420
  421 IEFKPEEASI MFQRWINGQP L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.39794
Match: 1ivyA
Description: Human 'protective protein', HPP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 3.12335967816646 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 1.55159061470324 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
palmitoyl-CoA hydrolase activity 0.815337671271829 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.541803897301601 bayes_pls_golite062009
binding 0.351031277062254 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle