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View Structure Prediction Details

Protein: R35A3_ARATH
Organism: Arabidopsis thaliana
Length: 112 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for R35A3_ARATH.

Description E-value Query
Range
Subject
Range
R35A1_ARATH - 60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1
179.0 [0..1] [112..1]
gi|13430186 - gi|13430186|gb|AAK25760.1|AF334840_1 ribosomal protein L33 [Castanea sativa]
178.0 [0..1] [112..1]
gi|125553257 - gi|125553257|gb|EAY98966.1| hypothetical protein OsI_20924 [Oryza sativa Indica Group]
gi|113579835, gi... - gi|50932737|ref|XP_475896.1| putative ribosomal protein L35A [Oryza sativa (japonica cultivar-group)...
174.0 [0..2] [112..1]
RL35A_RAT - 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1
RL35A_MOUSE - 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=1 SV=2
tr|G1SF08|G1SF08... - pep:novel chromosome:oryCun2:14:93169690:93172758:1 gene:ENSOCUG00000001232 transcript:ENSOCUT000000...
174.0 [0..9] [112..2]
gi|60831600 - gi|60831600|gb|AAX36977.1| ribosomal protein L35a [synthetic construct]
173.0 [0..9] [112..2]
gi|226496477, gi... - gi|99866715|gb|ABF67929.1| ribosomal protein L35A [Zea mays], gi|226496477|ref|NP_001148377.1| 60S r...
172.0 [0..1] [112..1]
gi|114591394 - gi|114591394|ref|XP_001167427.1| PREDICTED: similar to Ribosomal protein L35a isoform 4 [Pan troglod...
172.0 [0..9] [112..39]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKGRQGERV RLYVRGTILG YKRSKSNQYP NTSLVQIEGV NTQEEVNWYK GKRMAYIYKA  60
   61 KTKKNGSHYR CIWGKVTRPH GNSGVVRAKF TSNLPPKSMG SRVRVFMYPS NI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.30103
Match: 1sqrA
Description: Solution Structure of the 50S Ribosomal Protein L35AE from Pyrococcus furiosus. Northeast Structural Genomics Consortium Target PfR48.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle