| Protein: | SCC12_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 810 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCC12_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
509.0 | [0..1] | [810..1] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MFYSHCLVSR KGPLGAIWVA AYFFKKLKKS QVKATHIPSS VDQILQKELD ALTYRVLAYL 60
61 LLGVVRIYSK KVDFLFDDCN KALIGVKEFV AKERNREKTG VSLPAS
|
| Detection Method: |  |
| Confidence: | 52.387216 |
| Match: | PF04825.4 |
| Description: | No description for PF04825.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [107-345] |
1 11 21 31 41 51
| | | | | |
1 IECFSIALPE RFELDAFDLG VLEDFHGGNV KPHEDITLKD GSQETERMDM YSMERFDMEE 60
61 DLLFTFHETF STNHNENKHE SFAHDMELDA ENVRDTTEEA SVRVVEAEPL DSNEPSRDHQ 120
121 NASRHREDPE SDDILLEPQM SEDIRIAQEE DTVRETICTI VQRLVDSHES SGDNLHRDGH 180
181 TENLESEKTS KKTSCEEMQH DRSLPSECGI PEAIHGIEDQ PSGATRINGE KEIPEMSTL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [346-591] |
1 11 21 31 41 51
| | | | | |
1 EKPEPVSVTG SRDLQEGVEK CRDHNEAEMA DFELFHGSHK EQSETSEVNL HGSEKGFLSD 60
61 MTVSKDPSSE FNATDTPVTV TPKTPSRLKI SEGGTSPQFS IIPTPAAKES SRVSRKRKCL 120
121 IDDEVIIPNK VMKEMIEDSS KLLAKRRNVP HTDCPERRTK RFANPFRSFL EPLIQYGSSD 180
181 LQSLFCQPIK LKNWATTGTP KDTKIARHKE KSSLDTVRSP GVILSSDQTE NTQEIMETPQ 240
241 AAALAG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [592-726] |
1 11 21 31 41 51
| | | | | |
1 LKVTAGNSNV VSVEMGASST TSGTAHQTEN AAETPVKPSV IAPETPVRTS EQTVIAPETP 60
61 VVSEQVEIAP ETPVRESMSK RFFKDPGTCY KKSRPASPFT SFEEHPSVYY VENRDLDTIL 120
121 MNDEQVNADE RQDLQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [727-810] |
1 11 21 31 41 51
| | | | | |
1 QETWSSRTRN VAKFLEKTFL EQREREEEEK VSLLQLCRGR TQKESARLFY ETLVLKTKGY 60
61 VEVKQNHPYS DVFLMRVSRP QKAC
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1w1wE |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
