Protein: | SCC11_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 627 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCC11_ARATH.
Description | E-value | Query Range |
Subject Range |
|
475.0 | [0..16] | [627..6] |
Region A: Residues: [1-175] |
1 11 21 31 41 51 | | | | | | 1 MLRLESLIVT VWGPATLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP 60 61 MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL PKGKTHARKE 120 121 AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQ |
Detection Method: | |
Confidence: | 36.408935 |
Match: | PF04825.4 |
Description: | No description for PF04825.4 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [176-269] |
1 11 21 31 41 51 | | | | | | 1 QFHQADAENI TLFEYHGSFQ TNNETYDRFE RFDIEGDDET QMNSNPREGA EIPTTLIPSP 60 61 PRHHDIPEGV NPTSPQRQEQ QENRRDGFAE QMEE |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [270-511] |
1 11 21 31 41 51 | | | | | | 1 QNIPDKEEHD RPQPAKKRAR KTATSAMDYE QTIIAGHVYQ SWLQDTSDIL CRGEKRKVRG 60 61 TIRPDMESFK RANMPPTQLF EKDSSYPPQL YQLWSKNTQV LQTSSSESRH PDLRAEQSPG 120 121 FVQERMHNHH QTDHHERSDT SSQNLDSPAE ILRTVRTGKG ASVESMMAGS RASPETINRQ 180 181 AADINVTPFY SGDDVRSMPS TPSARGAASI NNIEISSKSR MPNRKRPNSS PRRGLEPVAE 240 241 ER |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [512-627] |
1 11 21 31 41 51 | | | | | | 1 PWEHREYEFE FSMLPEKRFT ADKEILFETA STQTQKPVCN QSDEMITDSI KSHLKTHFET 60 61 PGAPQVESLN KLAVGMDRNA AAKLFFQSCV LATRGVIKVN QAEPYGDILI ARGPNM |
Detection Method: | |
Confidence: | 12.30103 |
Match: | 1w1wE |
Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 0.835523092977445 | bayes_pls_golite062009 |
transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
DNA binding | 0.3118855114645 | bayes_pls_golite062009 |