YRC Public Data Repository - Protein Structure Prediction

Protein:	RT10_ARATH
Organism:	Arabidopsis thaliana
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT10_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21536735 - gi\|21536735\|gb\|AAM61067.1\| putative 40S ribosomal protein S10 [Arabidopsis thaliana]	276.0	[0..1]	[241..1]
gi\|11177520 - gi\|11177520\|gb\|AAG32316.1\| ribosomal protein S10 [Daucus carota]	185.0	[0..1]	[236..1]
gi\|40738639, gi\|... - gi\|67540638\|ref\|XP_664093.1\| hypothetical protein AN6489.2 [Aspergillus nidulans FGSC A4], ref\|XP_41... RT10_EMENI - 30S ribosomal protein S10, mitochondrial OS=Emericella nidulans GN=rsm10 PE=3 SV=1	160.0	[0..36]	[231..22]
gi\|48871257 - gi\|48871257\|ref\|ZP_00323973.1\| COG0051: Ribosomal protein S10 [Pediococcus pentosaceus ATCC 25745]	151.0	[0..120]	[216..36]
RS10_BLOFL - 30S ribosomal protein S10 OS=Blochmannia floridanus GN=rpsJ PE=3 SV=1	148.0	[0..125]	[216..1]
gi\|52426104, gi\|... - gi\|52426104\|ref\|YP_089241.1\| 30S ribosomal protein S10 [Mannheimia succiniciproducens MBEL55E], gi\|5...	148.0	[0..125]	[216..20]
RS10_BRASO - 30S ribosomal protein S10 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsJ PE=3 SV=1 RS10_BRASB - 30S ribosomal protein S10 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsJ PE=3 SV=1 RS10_RHOPT - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsJ PE=3 SV=1 RS10_BRAJA - 30S ribosomal protein S10 OS=Bradyrhizobium japonicum GN=rpsJ PE=3 SV=1 RS10_RHOPA - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris GN=rpsJ PE=1 SV=3 gi\|85715132, gi\|... - gi\|85715132\|ref\|ZP_01046116.1\| 30S ribosomal protein S10 [Nitrobacter sp. Nb-311A], gi\|85698047\|gb\|E... RS10_NITHX - 30S ribosomal protein S10 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsJ PE=3 SV=1 RS10_RHOP5 - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsJ PE=3 SV=1 RS10_BRADU - 30S ribosomal protein S10 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479... RS10_RHOPS - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsJ PE=3 SV=1 rpsJ - rpsJ 30S ribosomal protein S10 3659530:3659838 reverse MW:11668 RS10_NITWN - 30S ribosomal protein S10 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsJ PE=3 SV=1 RS10_RHOP2 - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsJ PE=3 SV=1	147.0	[0..125]	[216..1]
RS10_CHRSD - 30S ribosomal protein S10 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	147.0	[0..125]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAGVLRRSS LPSRQTLSAA LASFNSCISH NLTPATTGAS VSSRFTLASS PNSFGIRARN  60
   61 IHIRSEPSMI VPAGIASQGY ATVTKDRKNE IKKAKIKISP DNVRPLSRKE IALQKEAAEE 120
  121 STSK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.674	N/A	N/A	f.1.4	Bcl-2 inhibitors of programmed cell death
View	Download	0.554	N/A	N/A	f.1.4	Bcl-2 inhibitors of programmed cell death
View	Download	0.455	N/A	N/A	d.58.57	Description not found.
View	Download	0.416	N/A	N/A	d.58.9	RuBisCO, large subunit, small (N-terminal) domain
View	Download	0.389	N/A	N/A	d.218.1	Nucleotidyltransferase
View	Download	0.389	N/A	N/A	d.218.1	Nucleotidyltransferase
View	Download	0.373	N/A	N/A	a.88.1	LigA subunit of an aromatic-ring-opening dioxygenase LigAB
View	Download	0.369	N/A	N/A	a.1.1	Globin-like
View	Download	0.346	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.310	N/A	N/A	d.110.4	SNARE-like
View	Download	0.267	N/A	N/A	d.110.4	SNARE-like
View	Download	0.264	N/A	N/A	d.58.4	Dimeric alpha+beta barrel
View	Download	0.258	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.236	N/A	N/A	b.1.1	Immunoglobulin

Predicted Domain #2

Region A:
Residues: [125-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKGTKICIAI RSFVNPEKQA WCLPPHTRKV AMPDTRTLYT VLRSPHVDKK SREQFEMRFK  60
   61 KRFLVIKAQS HELSKKLFWL KRYRILGAQY ELQFHCKTRL DMTQVLGNIN GSTTNAY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	1p6gJ
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits