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View Structure Prediction Details

Protein: RR4_ARATH
Organism: Arabidopsis thaliana
Length: 201 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RR4_ARATH.

Description E-value Query
Range
Subject
Range
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1
320.0 [0..1] [200..1]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYRGPRFK KIRRLGALPG LTSKRPKAGS DLRNQSRSVK KSQYRIRLEE KQKLRFHYGL  60
   61 TEHQLLKYVR IAGKAKGSTG QVLLQLLEMR LDNILFRLGM ALTIPQARQL VNHGHILVNG 120
  121 RIVDIPSYRC KPRDIITVKD EQNSRTLVQN LLDSSAPEEL PNHLTLHTFQ YEGLVNQIID 180
  181 RKCVGLKINE LLVVEYYSRQ T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.09691
Match: 1vs5D
Description: No description for 1vs5D was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.39690558966302 bayes_pls_golite062009
structural molecule activity 8.82127733244958 bayes_pls_golite062009
RNA binding 1.78858120096157 bayes_pls_golite062009
nucleic acid binding 1.46320109129014 bayes_pls_golite062009
binding 1.39612080445111 bayes_pls_golite062009
protein binding 0.355025246110141 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle