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View Structure Prediction Details

Protein: NRPB3_ARATH
Organism: Arabidopsis thaliana
Length: 319 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRPB3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593370 - gi|21593370|gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis thalia...
308.0 [0..1] [319..1]

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Predicted Domain #1
Region A:
Residues: [1-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGATYQRFP KIKIRELKDD YAKFELRETD VSMANALRRV MISEVPTVAI DLVEIEVNSS  60
   61 VLNDEFIAHR LGLIPLTSER AMSMRFSRDC DACDGDGQCE FCSVEFRLSS KCVTDQTLDV 120
  121 TSRDLYSADP TVTPVDFTID SSVSDSSEHK GIIIVKLRRG QELKLRAIAR KGIGKDHAKW 180
  181 SPAATVTFMY EPDIIINEDM MDTLSDEEKI DLIESSPTKV FGMDPVTRQV VVVDPEAYTY 240
  241 DEEVIKKAEA MGKPGLIEIS PKDDSFIFTV ESTGAVKASQ LVLNAIDLLK QKLDAVRLSD 300
  301 DTVEADDQFG ELGAHMRGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 1i3qC
Description: RPB3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle