| Protein: | CP29A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 342 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CP29A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
233.0 | [0..17] | [342..2] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MSASASSLSA FNPKSLPLCV SRPASVSVLP PSLSFKLHSD HLVSIFASSA LKCSSPAEYP 60
61 SRFVRNVAVS SDFEVEEDDM FADGDDSAPV ERN
|
| Detection Method: |  |
| Confidence: | 33.0 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [94-342] |
1 11 21 31 41 51
| | | | | |
1 SFSPDLKLFV GNLSFNVDSA QLAQLFESAG NVEMVEVIYD KVTGRSRGFG FVTMSTAAEV 60
61 EAAAQQFNGY EFEGRPLRVN AGPPPPKREE SFSRGPRSGG YGSERGGGYG SERGGGYGSE 120
121 RGGGYGSERG GGYGSQRSGG GYGGSQRSSY GSGSGSGSGS GSGNRLYVGN LSWGVDDMAL 180
181 ENLFNEQGKV VEARVIYDRD SGRSKGFGFV TLSSSQEVQK AINSLNGADL DGRQIRVSEA 240
241 EARPPRGQF
|
| Detection Method: | |
| Confidence: | 21.045757 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.30587477666777 | bayes_pls_golite062009 |
| nucleic acid binding | 1.22428546892165 | bayes_pls_golite062009 |
| protein binding | 0.88951142240317 | bayes_pls_golite062009 |
| RNA binding | 0.498012521772139 | bayes_pls_golite062009 |
