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View Structure Prediction Details

Protein: PYRD_ARATH
Organism: Arabidopsis thaliana
Length: 460 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRD_ARATH.

Description E-value Query
Range
Subject
Range
gi|10177819 - gi|10177819|dbj|BAB11185.1| dihydroorotate dehydrogenase precursor [Arabidopsis thaliana]
328.0 [0..1] [436..1]

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Predicted Domain #1
Region A:
Residues: [1-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRAATSSA KWAREFLFRR VSSNPLGATR NCSSVPGASS APKVPHFSKR GRILTGATIG  60
   61 LAIAGGAYVS TADEATFCGW LFNATKVVNP FFALLDAEFA HKLAVSAAAR GWVPREKRPD 120
  121 PAILGLEVWG RKFSNPIGLA AGFDKNAEAT EGLLGMGFGF VEVGSVTPVP QEGNPKPRIF 180
  181 RLSQEGAIIN RCGFNSEGIV VVAKRLGAQH GKRMLAETSA TSSSPSDDVK PGGKSGPGIL 240
  241 GVNLGKNKTS EDAAADYVQG VHNLSQYADY LVINVSSPNT AGLRMLQGRK QLKDLVKKVQ 300
  301 AARDEMQWGD EGPPPLLVKI APDLSRGELE DIAAVALALH LDGLIISNTT VSRPDAVSNN 360
  361 PVATETGGLS GKPLFALSTN MLRDMYTLTR GKIPLIGCGG VSSGEDAYKK IRAGATLVQL 420
  421 YTGFAYGGPA LIPQIKEELV KCLERDGFKS IHEAIGADHR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.0
Match: 2fptA
Description: No description for 2fptA was found.

Predicted functions:

Term Confidence Notes
oxidoreductase activity 2.7385769437489 bayes_pls_golite062009
dihydroorotate dehydrogenase activity 2.73800716363956 bayes_pls_golite062009
dihydroorotate oxidase activity 2.35584458985229 bayes_pls_golite062009
catalytic activity 1.94749091175302 bayes_pls_golite062009
dihydropyrimidine dehydrogenase (NADP+) activity 1.76080169529176 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 0.962937319088834 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 0.876786102965635 bayes_pls_golite062009
nucleic acid binding 0.126127705865716 bayes_pls_golite062009
binding 0.100344139383616 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle