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View Structure Prediction Details

Protein: PGMP_ARATH
Organism: Arabidopsis thaliana
Length: 623 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGMP_ARATH.

Description E-value Query
Range
Subject
Range
gi|6686811, gi|2... - gi|6686811|emb|CAB64725.1| phosphoglucomutase [Arabidopsis thaliana], pir||T52656 phosphoglucomutase...
620.0 [0..1] [623..1]

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Predicted Domain #1
Region A:
Residues: [1-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTYTRFDT VFLFSRFAGA KYSPLLPSPS FTLSTSGIHI RTKPNSRFHS IIASSSSSSV  60
   61 VAGTDSIEIK SLPTKPIEGQ KTGTSGLRKK VKVFMEDNYL ANWIQALFNS LPLEDYKNAT 120
  121 LVLGGDGRYF NKEASQIIIK IAAGNGVGQI LVGKEGILST PAVSAVIRKR KANGGFIMSA 180
  181 SHNPGGPEYD WGIKFNYSSG QPAPETITDK IYGNTLSISE IKVAEIPDID LSQVGVTKYG 240
  241 NFSVEVIDPV SDYLELMEDV FDFDLIRGLL SRSDFGFMFD AMHAVTGAYA KPIFVDNLGA 300
  301 KPDSISNGVP LEDFGHGHPD PNLTYAKDLV DVMYRDNGPD FGAASDGDGD RNMVLGNKFF 360
  361 VTPSDSVAII AANAQEAIPY FRAGPKGLAR SMPTSGALDR VAEKLKLPFF EVPTGWKFFG 420
  421 NLMDAGKLSI CGEESFGTGS DHIREKDGIW AVLAWLSILA HRNKDTKPGD KLVSVADVVK 480
  481 EYWATYGRNF FSRYDYEECE SEGANKMIEY LREILSKSKA GDVYGNYVLQ FADDFSYTDP 540
  541 VDGSVASKQG VRFVFTDGSR IIFRLSGTGS AGATVRIYIE QFEPDVSKHD VDAQIALKPL 600
  601 IDLALSVSKL KDFTGREKPT VIT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 150.0
Match: 1c47A
Description: Phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoglucomutase activity 6.00700548116478 bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases 2.81013216982616 bayes_pls_golite062009
isomerase activity 2.10512181960585 bayes_pls_golite062009
catalytic activity 1.90838528948382 bayes_pls_golite062009
binding 1.81828980398861 bayes_pls_golite062009
structural molecule activity 1.71130645303643 bayes_pls_golite062009
intramolecular transferase activity 1.30184724715376 bayes_pls_golite062009
phosphomannomutase activity 0.96914970670646 bayes_pls_golite062009
protein binding 0.359358565373414 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle