YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PGMC2_ARATH
Organism: Arabidopsis thaliana
Length: 585 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGMC2_ARATH.

Description E-value Query
Range
Subject
Range
PGMC1_ARATH - Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g23190 PE=2 SV=2
560.0 [0..2] [585..1]

Back

Predicted Domain #1
Region A:
Residues: [1-585]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFKVSLVS TSPIDGQKPG TSGLRKKVKV FKQPNYLENF VQATFNALTT EKVKGATLVV  60
   61 SGDGRYYSEQ AIQIIVKMAA ANGVRRVWVG QNSLLSTPAV SAIIRERVGA DGSKATGAFI 120
  121 LTASHNPGGP TEDFGIKYNM ENGGPAPESI TDKIYENTKT IKEYPIAEDL PRVDISTIGI 180
  181 TSFEGPEGKF DVEVFDSADD YVKLMKSIFD FESIKKLLSY PKFTFCYDAL HGVAGAYAHR 240
  241 IFVEELGAPE SSLLNCVPKE DFGGGHPDPN LTYAKELVAR MGLSKTDDAG GEPPEFGAAA 300
  301 DGDADRNMIL GKRFFVTPSD SVAIIAANAV GAIPYFSSGL KGVARSMPTS AALDVVAKNL 360
  361 GLKFFEVPTG WKFFGNLMDA GMCSVCGEES FGTGSDHIRE KDGIWAVLAW LSILAHKNKE 420
  421 TLDGNAKLVT VEDIVRQHWA TYGRHYYTRY DYENVDATAA KELMGLLVKL QSSLPEVNKI 480
  481 IKGIHPEVAN VASADEFEYK DPVDGSVSKH QGIRYLFEDG SRLVFRLSGT GSEGATIRLY 540
  541 IEQYEKDASK IGRDSQDALG PLVDVALKLS KMQEFTGRSS PTVIT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 152.0
Match: 1c47A
Description: Phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoglucomutase activity 6.00700548116478 bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases 2.81013216982616 bayes_pls_golite062009
isomerase activity 2.10512181960585 bayes_pls_golite062009
catalytic activity 1.90838528948382 bayes_pls_golite062009
binding 1.81828980398861 bayes_pls_golite062009
structural molecule activity 1.71130645303643 bayes_pls_golite062009
intramolecular transferase activity 1.30184724715376 bayes_pls_golite062009
phosphomannomutase activity 0.96914970670646 bayes_pls_golite062009
protein binding 0.359358565373414 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle