YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MGN_ARATH
Organism: Arabidopsis thaliana
Length: 150 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MGN_ARATH.

Description E-value Query
Range
Subject
Range
gi|218186682 - gi|218186682|gb|EEC69109.1| hypothetical protein OsI_38020 [Oryza sativa Indica Group]
MGN_ORYSJ - Protein mago nashi homolog OS=Oryza sativa subsp. japonica GN=Os12g0287200 PE=2 SV=2
MGN_ORYSA - Protein mago nashi homolog (Mago nashi-like protein) - Oryza sativa (Rice)
302.0 [0..7] [150..15]

Back

Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV  60
   61 LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH ISFATSKIGS LVDCQSSNDP 120
  121 EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.522879
Match: 1hl6B
Description: Mago nashi protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.27048396817643 bayes_pls_golite062009
protein binding 0.967371813449539 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle