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View Structure Prediction Details

Protein: GLO2_ARATH
Organism: Arabidopsis thaliana
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLO2_ARATH.

Description E-value Query
Range
Subject
Range
gi|54043095 - gi|54043095|gb|AAV28535.1| glycolate oxidase [Brassica napus]
345.0 [0..1] [367..1]

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Predicted Domain #1
Region A:
Residues: [1-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITNVTEYD AIAKAKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVNKIDM  60
   61 ATTVLGFKIS MPIMVAPTAF QKMAHPDGEY ATARAASAAG TIMTLSSWAT SSVEEVASTG 120
  121 PGIRFFQLYV YKNRKVVEQL VRRAEKAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL 180
  181 KNFEGLDLGK MDEANDSGLA SYVAGQIDRT LSWKDIQWLQ TITNMPILVK GVLTGEDARI 240
  241 AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRV PVFLDGGVRR GTDVFKALAL 300
  301 GASGIFIGRP VVFALAAEGE AGVKKVLQML RDEFELTMAL SGCRSLSEIT RNHIVTEWDT 360
  361 PRHLPRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.221849
Match: 1goxA
Description: REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on the CH-CH group of donors 5.53040931722074 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 4.99876306143789 bayes_pls_golite062009
L-lactate dehydrogenase (cytochrome) activity 4.62364477397179 bayes_pls_golite062009
lactate dehydrogenase activity 4.48836665081946 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor 4.26416137128289 bayes_pls_golite062009
oxidoreductase activity 3.55520438339582 bayes_pls_golite062009
2,4-dienoyl-CoA reductase (NADPH) activity 2.53740821102118 bayes_pls_golite062009
catalytic activity 1.94749091175302 bayes_pls_golite062009
binding 1.13068993839107 bayes_pls_golite062009
(S)-2-hydroxy-acid oxidase activity 1.08257847863105 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor 0.922853827985629 bayes_pls_golite062009
NADH dehydrogenase activity 0.449365788564188 bayes_pls_golite062009
nucleic acid binding 0.428925551338656 bayes_pls_golite062009
protein binding 0.174608759343963 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor 0.0276574257865798 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle