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View Structure Prediction Details

Protein: GL1_ARATH
Organism: Arabidopsis thaliana
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|15529304, gi|... - gi|15529306|gb|AAL01217.1|AF263692_1 glabrous 1 [Arabidopsis thaliana], gi|15529304|gb|AAL01216.1|AF...
226.0 [0..1] [228..1]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIRRRDEKE NQEYKKGLWT VEEDNILMDY VLNHGTGQWN RIVRKTGLKR CGKSCRLRWM  60
   61 NYLSPNVNKG NFTEQEEDLI IRLHKLLGNR WSLIAKRVPG RTDNQVKNYW NTHLSKKLVG 120
  121 DYSSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 1h88C
Description: c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [126-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKTTGEDDDS PPSLFITAAT PSSCHHQQEN IYENIAKSFN GVVSASYEDK PKQELAQKDV  60
   61 LMATTNDPSH YYGNNALWVH DDDFELSSLV MMNFASGDVE YCL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.552 g.52.1 Inhibitor of apoptosis (IAP) repeat
View Download 0.523 a.24.15 FAD-dependent thiol oxidase
View Download 0.502 a.4.1 Homeodomain-like
View Download 0.498 a.1.1 Globin-like
View Download 0.489 g.52.1 Inhibitor of apoptosis (IAP) repeat


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle