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View Structure Prediction Details

Protein: ERF1X_ARATH
Organism: Arabidopsis thaliana
Length: 436 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF1X_ARATH.

Description E-value Query
Range		 Subject
Range
ETF1 - eukaryotic translation termination factor 1
ERF1_MOUSE - Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4
ERF1_MESAU - Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3
gi|118097222 - gi|118097222|ref|XP_414511.2| PREDICTED: similar to C11 protein [Gallus gallus]
ERF1_RABIT - Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=1 SV=3
gi|114601971, gi... - gi|114601971|ref|XP_001171542.1| PREDICTED: eukaryotic translation termination factor 1 isoform 3 [P...
gi|126290367 - gi|126290367|ref|XP_001368222.1| PREDICTED: similar to C11 protein [Monodelphis domestica]
tr|M3WU44|M3WU44... - Uncharacterized protein OS=Felis catus GN=ETF1 PE=4 SV=1
ERF1_RAT - Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3
gi|73970878, gi|... - gi|73978635|ref|XP_531922.2| PREDICTED: similar to eukaryotic translation termination factor 1 (pred...
ENSCJAT00000013296 - null
gi|109078786 - gi|109078786|ref|XP_001113021.1| PREDICTED: similar to eukaryotic translation termination factor 1 (...
ERF1_BOVIN - Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3
 595.0 [0..3] [436..4]

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Predicted Domain #1
Region A:
Residues: [1-436] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDKNDDDKN IEIWKIKKLI KSLEAARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN  60
   61 IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV NEDGKEKKVT IDFEPFRPIN 120
  121 ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG 180
  181 RGGQSALRFA RLRMEKRHNY VRKTAELATQ YYINPATSQP NVSGLILAGS ADFKTELSQS 240
  241 DMFDPRLAAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKRLIGK YFEEISQDTG 300
  301 KYVFGVEDTL NALESGAIET LIVWENLDIN RYVMKNSATG ETVIKHLNKE QEANTENFKV 360
  361 ADSDLALDVE EKLSLLEWLA NEYRRFGCAL EFVTNKSQEG SQFCRGFGGI GGILRYQLDM 420
  421 TAFDSEDGEA LDDDSE

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Detection Method: PSI-BLAST
Confidence: 171.0
Match: 1dt9A
Description: Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1; C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1; N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation release factor activity 11.5102558694213 bayes_pls_golite062009
translation termination factor activity 11.4768548464911 bayes_pls_golite062009
translation release factor activity, codon specific 7.66455753522311 bayes_pls_golite062009
structural constituent of ribosome 2.97154934968642 bayes_pls_golite062009
nucleic acid binding 2.70960972397471 bayes_pls_golite062009
structural molecule activity 2.64319832043379 bayes_pls_golite062009
binding 2.24516466558786 bayes_pls_golite062009
translation regulator activity 1.83257472130927 bayes_pls_golite062009
translation factor activity, nucleic acid binding 1.81472167858216 bayes_pls_golite062009
RNA binding 1.59103459949328 bayes_pls_golite062009
mRNA binding 0.607146672130391 bayes_pls_golite062009
protein binding 0.381324299701367 bayes_pls_golite062009
catalytic activity 0.264002643439785 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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