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View Structure Prediction Details

Protein: EF1D2_ARATH
Organism: Arabidopsis thaliana
Length: 231 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EF1D2_ARATH.

Description E-value Query
Range
Subject
Range
gi|114582926 - gi|114582926|ref|XP_001135927.1| PREDICTED: similar to elongation factor-1-beta [Pan troglodytes]
255.0 [0..2] [231..132]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFPNLNSG SGLKKLDEHL LTRSYITGYQ ASKDDITVFT ALSKPPTSEF VNVSRWFNHI  60
   61 DALLRISGVS AEGSGVIVEG SSPITEEAVA TPPAADSKDT AAEEEDDDDV DLFGEETEEE 120
  121 KKAAEERAAS VKASTKKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.221849
Match: 1ljrA
Description: Class theta GST
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.30738165079783 bayes_pls_golite062009
catalytic activity 0.963623964325467 bayes_pls_golite062009
protein binding 0.816387415768278 bayes_pls_golite062009
nucleic acid binding 0.46030380837916 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 0.44372379417457 bayes_pls_golite062009
transcription regulator activity 0.385619646192102 bayes_pls_golite062009
transferase activity 0.352222179598631 bayes_pls_golite062009
glutathione transferase activity 0.20688408808374 bayes_pls_golite062009
DNA binding 0.175092771820973 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [139-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESGKSSVLMD IKPWDDETDM KKLEEAVRSI QMEGLFWGAS KLVPVGYGIK KLHIMCTIVD  60
   61 DLVSIDTMIE EQLTVEPINE YVQSCDIVAF NKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.09691
Match: 1b64A
Description: SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMAIN FROM HUMAN ELONGATION FACTOR-ONE BETA, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation elongation factor activity 12.3173391557088 bayes_pls_golite062009
translation factor activity, nucleic acid binding 7.81664120156021 bayes_pls_golite062009
translation regulator activity 7.77673515271111 bayes_pls_golite062009
actin binding 3.32293986705361 bayes_pls_golite062009
cytoskeletal protein binding 2.89895269798148 bayes_pls_golite062009
binding 2.68915238463415 bayes_pls_golite062009
nucleic acid binding 2.61354904861592 bayes_pls_golite062009
protein binding 0.897731859503126 bayes_pls_golite062009
GTPase regulator activity 0.398118288595674 bayes_pls_golite062009
guanyl-nucleotide exchange factor activity 0.315265787470263 bayes_pls_golite062009
nucleoside-triphosphatase regulator activity 0.135573965021144 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle