YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DXR_ARATH
Organism: Arabidopsis thaliana
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DXR_ARATH.

Description E-value Query
Range
Subject
Range
gi|91241600, gi|... - gi|94421688|gb|ABF18928.1| putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasilien...
650.0 [0..2] [477..1]

Back

Predicted Domain #1
Region A:
Residues: [1-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTLNSLSPA ESKAISFLDT SRFNPIPKLS GGFSLRRRNQ GRGFGKGVKC SVKVQQQQQP  60
   61 PPAWPGRAVP EAPRQSWDGP KPISIVGSTG SIGTQTLDIV AENPDKFRVV ALAAGSNVTL 120
  121 LADQVRRFKP ALVAVRNESL INELKEALAD LDYKLEIIPG EQGVIEVARH PEAVTVVTGI 180
  181 VGCAGLKPTV AAIEAGKDIA LANKETLIAG GPFVLPLANK HNVKILPADS EHSAIFQCIQ 240
  241 GLPEGALRKI ILTASGGAFR DWPVEKLKEV KVADALKHPN WNMGKKITVD SATLFNKGLE 300
  301 VIEAHYLFGA EYDDIEIVIH PQSIIHSMIE TQDSSVLAQL GWPDMRLPIL YTMSWPDRVP 360
  361 CSEVTWPRLD LCKLGSLTFK KPDNVKYPSM DLAYAAGRAG GTMTGVLSAA NEKAVEMFID 420
  421 EKISYLDIFK VVELTCDKHR NELVTSPSLE EIVHYDLWAR EYAANVQLSS GARPVHA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 134.0
Match: 2eghA
Description: No description for 2eghA was found.

Predicted functions:

Term Confidence Notes
1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 3.73695658845135 bayes_pls_golite062009
oxidoreductase activity 2.60548927745815 bayes_pls_golite062009
catalytic activity 2.54843319568228 bayes_pls_golite062009
glyceraldehyde-3-phosphate dehydrogenase activity 2.42852631499395 bayes_pls_golite062009
glucose-6-phosphate dehydrogenase activity 2.40527964325542 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.41676087939212 bayes_pls_golite062009
glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity 1.08771562641109 bayes_pls_golite062009
retinol dehydrogenase activity 1.07588236908906 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 0.841370849960815 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle