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View Structure Prediction Details

Protein: CONS_ARATH
Organism: Arabidopsis thaliana
Length: 373 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CONS_ARATH.

Description E-value Query
Range
Subject
Range
gi|41323976 - gi|41323976|gb|AAS00054.1| CONSTANS-like protein CO1 [Populus deltoides]
368.0 [0..1] [373..51]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA NRVASRHKRV  60
   61 RVCESC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2ffwA
Description: No description for 2ffwA was found.

Predicted Domain #2
Region A:
Residues: [67-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERAPAAFLCE ADDASLCTAC DSEVHSANPL ARRHQRVPIL PISGNSFSSM TTTHHQSEKT  60
   61 MTDPEKRLVV DQEEGEEGDK DAKEVASWLF P

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.992
Match: 2djaA
Description: No description for 2djaA was found.

Predicted Domain #3
Region A:
Residues: [158-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSDKNNNNQN NGLLFSDEYL NLVDYNSSMD YKFTGEYSQH QQNCSVPQTS YGGDRVVPLK  60
   61 LEESRGHQCH NQQNFQFNIK YGSSGTHYND NGSINHNAYI SSMETGV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [265-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPESTACVTT ASHPRTPKGT VEQQPDPASQ MITVTQLSPM DREARVLRYR EKRKTRKFEK  60
   61 TIRYASRKAY AEIRPRVNGR FAKREIEAEE QGFNTMLMYN TGYGIVPSF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle