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View Structure Prediction Details

Protein: CAP6_ARATH
Organism: Arabidopsis thaliana
Length: 601 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP6_ARATH.

Description E-value Query
Range
Subject
Range
gi|7485840, gi|7... - pir||T04249 hypothetical protein F20B18.50 - Arabidopsis thaliana, gi|7269445|emb|CAB79449.1| predic...
428.0 [0..1] [601..1]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS  60
   61 VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR EGDPTFREEL LNYSHRGHIL 120
  121 RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN 180
  181 ASQTYRTRML SDEELLEQLP ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC 240
  241 AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR 300
  301 QPPPSFLATM EDYIKEAPQS GSVQKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.30103
Match: 1hf8A
Description: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.229007340928547 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [327-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEYQEKEEEE QEEEEAEHSV QPEEPAEADN QKENSEGDQP LIEEEEEDQE KIEEEDAKPS  60
   61 FLIDTDDLLG LNEINPKAAE IEDRNALALA IYPPGHEAP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [426-601]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPSNILSLIE TGGSGWELAL VTPQNNNNNN NPRPAPNTKL AGGFDNLLLD SLYEDDSARR  60
   61 QIQLTNAGYG HGGIDTTAAP PNPFQMQQDP FAMSNNIAPP TNVQMAMQQQ QQQQMTMMHQ 120
  121 SPYNYTHPHD YHQNHHHHQF SAGPSPSNPF GDAFLALPPP PGSAGPQQNN HHHMLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.522879
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

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