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View Structure Prediction Details

Protein: CAP11_ARATH
Organism: Arabidopsis thaliana
Length: 374 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP11_ARATH.

Description E-value Query
Range
Subject
Range
gi|114639682 - gi|114639682|ref|XP_508908.2| PREDICTED: phosphatidylinositol-binding clathrin assembly protein [Pan...
336.0 [0..21] [374..153]

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Predicted Domain #1
Region A:
Residues: [1-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLDLSAKFR QVLGLAKDHA SIGRAIVQNY NEKAFFDIEV AVVRATSHDD CPVDDKTMHE  60
   61 ILFLVSNTPG SIPFLAEQIS RRLAKTRDCL VAGKTLLLFH RLLRGSSRSI EQQLHIAHTS 120
  121 GHLQIGCSWF MMSLDSRSFV FLQNYVAYLQ ERVGWIINQA GKLEPVMSGG TKFSRYKEKS 180
  181 MDLVFHILPK CQEFIAQVLK CSPVDAWPID NLVQAATGNI LKESFQVYMT YSDGMTALVS 240
  241 MLFDLSRPAR DLACGMLRKA SQQIQDLRIL YDKCRGFAGM KSLDYPSVQA ISMDHIVALE 300
  301 ECSSYGGKRG FSLSTNLRDA ITCNELKQEQ HSASFSSTSP FSLPVETKIS MVWVVFDNED 360
  361 GEESDKQTEK AYER

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.0
Match: 1hf8A
Description: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.229007340928547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle