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View Structure Prediction Details

Protein: AP2_ARATH
Organism: Arabidopsis thaliana
Length: 432 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|61608335 - gi|61608335|gb|AAX47049.1| AP2-like transcriptional factor [Brassica rapa]
276.0 [0..1] [432..1]
gi|46395277 - gi|46395277|dbj|BAD16603.1| APETALA2-like protein 1 [Pinus thunbergii]
245.0 [0..10] [430..54]
gi|11181610 - gi|11181610|gb|AAG32658.1|AF253970_1 APETALA2-related transcription factor 1 [Picea abies]
237.0 [0..15] [430..84]
gi|76365507 - gi|76365507|gb|ABA42146.1| aintegumenta [Brassica napus]
237.0 [0..8] [397..163]
gi|53830035 - gi|53830035|gb|AAU94925.1| floral homeotic protein [Triticum turgidum subsp. carthlicum]
231.0 [0..1] [431..2]
gi|1171429 - gi|1171429|gb|AAA86281.1| CKC
231.0 [0..7] [397..159]
gi|28894443 - gi|28894443|gb|AAO52746.1| LIPLESS1 [Antirrhinum majus]
217.0 [0..1] [428..1]
gi|18476518 - gi|18476518|gb|AAL50205.1| APETALA2-like protein [Hordeum vulgare]
215.0 [0..1] [431..2]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL  60
   61 VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS AGKATNVAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVVEPAQPLK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA  60
   61 YDRAAIKFRG VEADINFNID DYDDDLKQMT NLTKEEFVHV LRRQSTGFPR 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.43
Match: 2gccA
Description: SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [220-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEVEA ARAYDKAAIK CNGKDAVTNF  60
   61 DPSIYDEELN AESSGNPTTP QDHNLDLSLG NSANSKHKSQ DMRLRMNQQQ QDSLHSNEVL 120
  121 GLGQTGMLNH TPNSNHQFPG SSNIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 2gccA
Description: SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [365-432]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGGGFSLFPA AENHRFDGRA STNQVLTNAA ASSGFSPHHH NQIFNSTSTP HQNWLQTNGF  60
   61 QPPLMRPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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