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View Structure Prediction Details

Protein: CSD_BACSU
Organism: Bacillus subtilis
Length: 406 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSD_BACSU.

Description E-value Query
Range
Subject
Range
gi|89200187, gi|... - gi|89200187|ref|ZP_01178942.1| Cysteine desulphurases, SufS [Bacillus cereus subsp. cytotoxis NVH 39...
415.0 [0..1] [406..1]

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Predicted Domain #1
Region A:
Residues: [1-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNITDIREQF PILHQQVNGH DLVYLDSAAT SQKPRAVIET LDKYYNQYNS NVHRGVHTLG  60
   61 TRATDGYEGA REKVRKFINA KSMAEIIFTK GTTTSLNMVA LSYARANLKP GDEVVITYME 120
  121 HHANIIPWQQ AVKATGATLK YIPLQEDGTI SLEDVRETVT SNTKIVAVSH VSNVLGTVNP 180
  181 IKEMAKIAHD NGAVIVVDGA QSTPHMKIDV QDLDCDFFAL SSHKMCGPTG VGVLYGKKAL 240
  241 LENMEPAEFG GEMIDFVGLY ESTWKELPWK FEAGTPIIAG AIGLGAAIDF LEEIGLDEIS 300
  301 RHEHKLAAYA LERFRQLDGV TVYGPEERAG LVTFNLDDVH PHDVATVLDA EGIAVRAGHH 360
  361 CAQPLMKWLD VTATARASFY LYNTEEEIDK LVEALQKTKE YFTNVF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 103.0
Match: 1t3iA
Description: Structure of slr0077/SufS, the Essential Cysteine Desulfurase from Synechocystis PCC 6803
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glycine dehydrogenase (decarboxylating) activity 2.82824364293374 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 2.82824364293374 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
transferase activity 1.44093490824786 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
carbon-sulfur lyase activity 0.698312655247044 bayes_pls_golite062009
cysteine desulfurase activity 0.67931229352972 bayes_pls_golite062009
cystathionine gamma-lyase activity 0.505859361763689 bayes_pls_golite062009
cystathionine beta-lyase activity 0.27933426619091 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 0.271623203801431 bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity 0.234399054481664 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 0.13686553668007 bayes_pls_golite062009
nucleic acid binding 0.013097682076602 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle