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View Structure Prediction Details

Protein: CINA_BACSU
Organism: Bacillus subtilis
Length: 416 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CINA_BACSU.

Description E-value Query
Range
Subject
Range
CINA_CALS8 - Putative competence-damage inducible protein OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43...
397.0 [0..7] [413..3]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFPKKAEII AVGSELLLGQ IANTNAQFIS KQLAEIGVHV FYHTAVGDNP ERLKQVIRIA  60
   61 EERSDFIIFS GGLGPTKDDL TKETIANTLG RPLVLNDEAF QSIEDYPKRT KRTMSPNNRK 120
  121 QALVIEGSDV LANHFGMAPG MLTEHESRYY MLLPGPPSEL RPMFENEAKP LLLKKMGSNE 180
  181 KIVSTVLRFF GIGESQLEPD LEDIIDAQTN PTIAPLAADG EVTLRLTAKH ADEKETERLL 240
  241 KETEAVILER VGEFFY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 2nqqA
Description: No description for 2nqqA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 1.9303555688427 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [257-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYDDTSLVKE LSIACKEKGI TISAAESFTG GLFSEWLTDH SGASKLFAGG VVCYTNDVKQ  60
   61 NVLGVKKETL DRFGAVSKEC ASELAKGVQK LTGSDIGISF TGVAGPDAQE GHEPGHVFIG 120
  121 ISANGKEEVH EFHFAGSRTG IRKRGAKYGC HLILKLLEQK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 2a9sA
Description: The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.666293440418936 bayes_pls_golite062009
binding 0.169690822508591 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle