| Protein: | SPBC8D2.09c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 111 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC8D2.09c.
| Description | E-value | Query Range |
Subject Range |
|
|
113.0 | [0..1] | [108..188] |
|
|
112.0 | [0..4] | [108..191] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MNQNTLYVNN LNDKINKNDL RTALYMLFST YGTVVDIVAL KTPKMRGQAH VVFFDPSAAA 60
61 IAMKALKNFI FFGKEMKIQY AHSKSKIIER IVAENDSRGP LKRLRDEADL E
|
| Detection Method: |  |
| Confidence: | 22.522879 |
| Match: | 1fhtA |
| Description: | RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN U1A117, NMR, 43 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
