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View Structure Prediction Details

Protein: gpi-1
Organism: Caenorhabditis elegans
Length: 586 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpi-1.

Description E-value Query
Range
Subject
Range
gi|73947982 - gi|73947982|ref|XP_853858.1| PREDICTED: similar to Glucose-6-phosphate isomerase (GPI) (Phosphogluco...
822.0 [0..38] [585..4]

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Predicted Domain #1
Region A:
Residues: [1-586]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFELFRFIF RKKKMLGYLS DLIGTLFIGD STEKAMSLSQ DATFVELKRH VEANEKDAQL  60
   61 LELFEKDPAR FEKFTRLFAT PDGDFLFDFS KNRITDESFQ LLMRLAKSRG VEESRNAMFS 120
  121 AEKINFTENR AVLHVALRNR ANRPILVDGK DVMPDVNRVL AHMKEFCNEI ISGSWTGYTG 180
  181 KKITDVVNIG IGGSDLGPLM VTESLKNYQI GPNVHFVSNV DGTHVAEVTK KLNAETTLFI 240
  241 IASKTFTTQE TITNAETAKE WFLAKAGDAG AVAKHFVALS TNVTKAVEFG IDEKNMFEFW 300
  301 DWVGGRYSLW SAIGLSIAVH IGFDNYEKLL DGAFSVDEHF VNTPLEKNIP VILAMIGVLY 360
  361 NNIYGAETHA LLPYDQYMHR FAAYFQQGDM ESNGKFVTRH GQRVDYSTGP IVWGEPGTNG 420
  421 QHAFYQLIHQ GTRLIPADFI APVKTLNPIR GGLHHQILLA NFLAQTEALM KGKTAAVAEA 480
  481 ELKSSGMSPE SIAKILPHKV FEGNKPTTSI VLPVVTPFTL GALIAFYEHK IFVQGIIWDI 540
  541 CSYDQWGVEL GKQLAKVIQP ELASADTVTS HDASTNGLIA FIKNNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1gzdA
Description: Phosphoglucose isomerase, PGI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glucose-6-phosphate isomerase activity 3.62042557708076 bayes_pls_golite062009
intramolecular oxidoreductase activity 2.12646274924126 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 1.62962150339138 bayes_pls_golite062009
catalytic activity 1.5278037255884 bayes_pls_golite062009
sugar binding 1.40175307923331 bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity 1.11549102314657 bayes_pls_golite062009
binding 1.0425673151455 bayes_pls_golite062009
D-sedoheptulose 7-phosphate isomerase activity 0.969046173332955 bayes_pls_golite062009
isomerase activity 0.875614547872629 bayes_pls_golite062009
carbohydrate binding 0.5730945843207 bayes_pls_golite062009
protein binding 0.152745336606766 bayes_pls_golite062009
transferase activity 0.0523744832826621 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 0.0239994594084577 bayes_pls_golite062009
transaminase activity 0.00531525548288503 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle