| Protein: | pab-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 586 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pab-1.
| Description | E-value | Query Range |
Subject Range |
|
|
428.0 | [0..1] | [586..72] |
|
Region A: Residues: [1-245] |
1 11 21 31 41 51
| | | | | |
1 MEMNVAAPAA AVAGAAAPQP GQNQTGSSYT MASLYVGDLH PDVNESILFE KFSAAGPVLS 60
61 IRVCRDNATR LSLGYAYVNF QQPADAERAM DTMNFEALHG KPMRIMWSQR DPAMRRSGAG 120
121 NIFIKNLDKV FVGKFQPRAQ RNRELGETAK QFTNVYVKNF GDHYNKETLE KLFAKFGNIT 180
181 SCEVMTVEGK SKGFGFVAFA NPEEAETAVQ ALHDSTIEGT DLKLHVCRAQ KKSERHAELK 240
241 KKHEQ
|
| Detection Method: |  |
| Confidence: | 44.0 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.60920363363072 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [246-350] |
1 11 21 31 41 51
| | | | | |
1 HKAERMQKYQ GVNLYVKNLD ETVDDDGLKK QFESYGNITS AKVMTDENGR SKGFGFVCFE 60
61 KPEEATSAVT EMNSKMVCSK PLYVAIAQRK EDRRAQLASQ YMQRL
|
| Detection Method: | |
| Confidence: | 4.42 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [351-447] |
1 11 21 31 41 51
| | | | | |
1 ASMRMHGNVP GAAMYNPTQP GPGYYVANPM QQQRNFAGGQ QMVRPGGRWG MQNQYPVQNQ 60
61 YMMAQGPGVY QNRMGRPQNQ QGGPRGPPQQ YNQVAQG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [448-586] |
1 11 21 31 41 51
| | | | | |
1 GVRMQGPPRT QNPGVQQQNV PRPPQQQQQQ RPAPTGPKAP PQPYQAYQQR PQGIVIGGQE 60
61 PLTSAMLAAA APQEQKQLLG ERIYALIEKL YPGHKDAGKI TGMMLEIDNS ELIMMLQDSE 120
121 LFRSKVDEAA SVLVSAQKQ
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.11788426448287 | bayes_pls_golite062009 |
| mRNA binding | 4.06818972936809 | bayes_pls_golite062009 |
| nucleic acid binding | 3.78909647605682 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 3.4111148675327 | bayes_pls_golite062009 |
| single-stranded RNA binding | 3.03728178586535 | bayes_pls_golite062009 |
| binding | 2.76167454154417 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.20136693536924 | bayes_pls_golite062009 |
| protein binding | 0.856075580719879 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
