Protein: | unc-30 |
Organism: | Caenorhabditis elegans |
Length: | 323 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for unc-30.
Description | E-value | Query Range |
Subject Range |
|
128.0 | [0..109] | [314..10] |
Region A: Residues: [1-108] |
1 11 21 31 41 51 | | | | | | 1 MDDNTATLTA IHQQQQSHNR FSNPLVCVGQ LDHHSLLPEH SISSSLAPLT HNPYAFNYSI 60 61 PLPPTDITTK LPKLELLSLD VKQEQDDNHL DTSSPTDSTG NGSTNGGK |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [109-180] |
1 11 21 31 41 51 | | | | | | 1 IQKPRRQRTH FTSHQLTELE NWFSRNRYPD MACREEIAVW ISLTEPRVRV WFKNRRAKWR 60 61 KRERNYVIDN GQ |
Detection Method: | |
Confidence: | 22.522879 |
Match: | 1yz8P |
Description: | Solution structure of the k50 class homeodomain pitx2 bound to dna and implications for mutations that cause rieger syndrome |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 3.61657063316558 | bayes_pls_golite062009 |
DNA binding | 3.20600447901865 | bayes_pls_golite062009 |
nucleic acid binding | 3.13775670276163 | bayes_pls_golite062009 |
transcription factor activity | 2.61318050866004 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.14408928200987 | bayes_pls_golite062009 |
binding | 2.12643314274039 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 1.77209608685482 | bayes_pls_golite062009 |
transcription activator activity | 1.75864690109096 | bayes_pls_golite062009 |
protein binding | 1.62529996900514 | bayes_pls_golite062009 |
transcription repressor activity | 0.605733396003465 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 0.380372494934551 | bayes_pls_golite062009 |
chromatin binding | 0.346262410069781 | bayes_pls_golite062009 |
transcription factor binding | 0.109547968922689 | bayes_pls_golite062009 |
Region A: Residues: [181-323] |
1 11 21 31 41 51 | | | | | | 1 GTTKVTAQSL DPLGSLQNTF PQTLLQSSSS QLDDSAVTSS SFYGYGGAWQ QNPYYSRNNQ 60 61 TTFNWQIKPQ DQFQFQTIPM SPTTATSRFS TAANLAPLPT AQAAFSTSAT SSNDKLKLMD 120 121 GLSNSLSSSL GQPYQPCQYS GPL |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.