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View Structure Prediction Details

Protein: sel-7
Organism: Caenorhabditis elegans
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sel-7.

Description E-value Query
Range
Subject
Range
gi|157772426 - gi|157772426|ref|XP_001678033.1| Hypothetical protein CBG07242 [Caenorhabditis briggsae AF16]
gi|187033526, gi... - gi|39596385|emb|CAE63003.1| Hypothetical protein CBG07242 [Caenorhabditis briggsae], gi|187033526|em...
553.0 [0..13] [324..1]

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Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQPNQPTPQ FQMAQIPLAA FFDNNESKTM LNSMNLRLND MDLKLSLILE LLATRLPDQR  60
   61 LPSIFTSPPQ TVISEAPPQS FTPSATNSTS DKTSSSLKTE LKTEDSDGDL DMEGEEDTEE 120
  121 LFDNESQPSQ RNQSPKETEV EDEKVLADGP FPEGAVKRAA EKAARSFQST QPKVFAWQIL 180
  181 RESVTDDELR NVQISLRTFH GETADHLLGR Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [212-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKIRLVVEA TMKYFKWDLL STESQLSKAK LILSHLKNNA KVRNWTLREG RPNRVAPATP  60
   61 PVNVDLVWKR YLALLGPAGF TGILPNLPQN LCNGGTQSPS IPQIDPSLFK VDA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle