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View Structure Prediction Details

Protein: sel-7
Organism: Caenorhabditis elegans
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sel-7.

Description E-value Query
Range
Subject
Range
gi|157772426 - gi|157772426|ref|XP_001678033.1| Hypothetical protein CBG07242 [Caenorhabditis briggsae AF16]
gi|187033526, gi... - gi|39596385|emb|CAE63003.1| Hypothetical protein CBG07242 [Caenorhabditis briggsae], gi|187033526|em...
553.0 [0..13] [324..1]

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Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQPNQPTPQ FQMAQIPLAA FFDNNESKTM LNSMNLRLND MDLKLSLILE LLATRLPDQR  60
   61 LPSIFTSPPQ TVISEAPPQS FTPSATNSTS DKTSSSLKTE LKTEDSDGDL DMEGEEDTEE 120
  121 LFDNESQPSQ RNQSPKETEV EDEKVLADGP FPEGAVKRAA EKAARSFQST QPKVFAWQIL 180
  181 RESVTDDELR NVQISLRTFH GETADHLLGR Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [212-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKIRLVVEA TMKYFKWDLL STESQLSKAK LILSHLKNNA KVRNWTLREG RPNRVAPATP  60
   61 PVNVDLVWKR YLALLGPAGF TGILPNLPQN LCNGGTQSPS IPQIDPSLFK VDA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle